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Index

This index is provided with the sole purpose of pointing to a page where you can find more information about the subject. You might have to read a good part of the page to actually find the information, and I do apologise. In any case, the best way to learn how to use Swiss-PdbViewer is to take the time to do the tutorials.

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z


Atop

Adding Residues

 

B top

B-factor

Backbone (colour)

Backbone (angles)

Building Loops

Building Residues

 

C top

Changing the chain name for some aa

Changing the size of the slab

Changing Phi/Psi angles for an amino-acid

Control Panel


Clearing user labels (distances, angles...)

Colours

Comparing two proteins

Crystallographic Symmetries (building)

 

D top

Deleting residues

Detecting Secondary Structures

Discarding molecule(s)

Display Menu

Distortions (identifying)

Downloading

 

E top

Electron Density Maps

Electrostatic potentials

Energy Minimisation

Energy (Threading)

 

F top

Feedback, Questions

Files

Fitting Molecules

Fitting (Residues into electron density)

Force Fields

 

G top

Gromos

 

H top

H-bonds

Homology Modelling

Hydrophobic Patches

 

I J K top

Identifying distorted parts of the protein

Image Gallery

 

L top

Local Coordinates

Labels

Loading Protein

Loops (Building)

 

M top

Measuring Distances, Angles, Torsions

Mean Force Potential (used during threading)

Menus

Merging several files

Modelling Proteins

Moving a molecule independently of others

Moving a subpart of the molecule only

Moving the slab along the Z axis

Mutations

 

N O P top

Phi/Psi (changing)

Phi/Psi (viewing)

Pov-Ray

Preferences

PROSITE Pattern

 

Q R top

Ramachandran Plots

Ray tracing

References

Rendering Quality (comparison)

Renumbering Amino-acids

Ribbon representations

RMS deviation

Rotate the molecule around a specific axis (X or Y or Z)

 

S top

Saving a structural alignment

Saving an image

Saving only a part of a file

Scripting Language

Secondary Structures

Selecting Residues (general considerations)

Select (menu)

Slab

Structural Alignments

Stereo view

Superposing Proteins

Surfaces

Symmetries (crystallographic)

Symmetries (non-crystallographic)

 

T U top

Threading Energy

Tips & Tricks

Tools (accessible from main window)

Tools (menu)

Torsions tools.

Tutorial (basic manipulation)

Tutorial (advanced examples)

 

V W X Y Z top

Viewing only the interior of the protein (slab mode)

Wine: Running windows binaries under Linux

World Coordinates