Home |  Contact |  Feedback 

References

If you publish pictures or models from SwissPdb Viewer, please cite the following paper:

Guex, N. and Peitsch, M.C. (1997)
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling.

Electrophoresis 18, 2714-2723.

If you can also include somewhere the official url, it would be nice.
http://www.expasy.org/spdbv/

Articles about Swiss-Pdb Viewer and SwissModel

  • Johansson, M.U., Zoete V., Michielin O. & Guex N. (2012)
    Defining and searching for structural motifs using DeepView/Swiss-PdbViewer
    BMC Bioinformatics, 13:173.
  • Guex N., Peitsch, MC, & Schwede T. (2009)
    Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: a historical perspective
    Electrophoresis, Jun;30 Suppl 1:S162-73
  • Schwede T, Kopp J , Guex N and Peitsch MC (2003)
    SWISS-MODEL: an automated protein homology-modeling server.
    Nucleic Acids Research 31:3381-3385
  • Guex N, Diemand A and Peitsch MC (1999)
    Protein modelling for all.
    TiBS 24:364-367.
  • Guex, N. and Peitsch, M.C. (1997)
    SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling.
    Electrophoresis 18, 2714-2723.

    Description of the homology modelling capabilities of Swiss-PdbViewer used in conjunction to the SWISS-MODEL server. It also gives a detailed example of what accuracy level you can expect from a model, and should be very instructive to people not familiar with protein modelling.
  • Guex, N and Peitsch, M.C.(1996)
    Swiss-PdbViewer: A Fast and Easy-to-use PDB Viewer for Macintosh and PC.
    Protein Data Bank Quaterly Newsletter 77, pp. 7.
  • Guex, N.(1996)
    Swiss-PdbViewer: A new fast and easy to use PDB viewer for the Macintosh.
    Experientia 52, pp. A26.

Articles cited in user guide (in construction)

  1. Weiner, S.J., Kollman, P.A., Case, D.A., Singh, U.C., Ghio, C., Alagona, G., Profeta, S.,Weiner, P.K.(1984)
    A new force field for molecular mechanical simulation of nucleic acids proteins.
    J. Am. Chem. Soc. 106,765-784.
  2. Morris, A.L., MacArthur, M.W., Hutchinson, E.G., Thornton, J.M.(1992)
    Stereochemical Quality of Protein Structure Coordinates.
    PROTEINS: Structure, Function, and Genetics 12,345-364.
  3. Carson, M. (1987)
    Ribbon model of macromolecules.
    J. mol. Graphics. 5,103-106.
  4. Vriend G. (1987,1993,1997)
    whatcheck.
  5. Huang, X., Miller, M. (1991)
    A Time-Efficient, Linear-Space Local Similarity Algorithm
    Adv. Appl. Math. 12,337-357.
  6. Sippl, J.M. (1990)
    Calculation of Conformational Ensembles from Potentials of Mean Force: an approach to the knowledge based prediction of local structures in globular proteins.
    J. Mol. Biol. 213,859-883.
  7. Schuettelkopf A.W. and van Aalten D,M,F. (2004)
    PRODRG - a tool for high-throughput crystallography of protein-ligand complexes.
    Acta Crystallographica D60,1355-1363
  8. G. J. Kleywegt, M. R. Harris, J. Zou, T. C. Taylor, A. Wählby and T. A. Jone (2004)
    The Uppsala Electron-Density Server.
    Acta Crystallographica D60,2240-2249
  9. Edgar, Robert C. (2004)
    MUSCLE: multiple sequence alignment with high accuracy and high throughput
    Nucleic Acids Research 32(5),1792-1797

N.Guex's Bibliography

  1. full list